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- Wenting Zhao, Gongping Xu, Long Wang, Zhen Cui, Tong Zhang, Jian Yang. Intra-Inter Graph Representation Learning for Protein-Protein Binding Sites Prediction. IEEE/ACM Transactions on Computational Biology and Bioinformatics (T-CBB), 2024.

- Xudong Wang, Tong Zhang, Guangbu Liu, Zhen Cui, Zhiyong Zeng, Cheng Long, Wenming Zheng, Jian Yang. LightRoseTTA: High-efficient and Accurate Protein Structure Prediction Using an Ultra-Lightweight Deep Graph Model. Advanced Science, 2024.